Protein ZmMADS39
ZmMADS39 is a protein in the MADS family.
Information
TF Name: ZmMADS39
Species: Maize
TF Family: MADS
Gene Name(Synonym): MADS39
Uniprot ID: K7U1A3
Subgenome: 2

Protein ZmMADS39

ZmMADS39 is a protein in the MADS family.

Overview of domains present in v5 transcripts
PF00319PF01486
Zm00001eb183200_T002
Zm00001eb183200_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d050897DAPseq no logo sequence fimo position
Zm00001d050897DAPseq no logo sequence fimo position
Zm00001d050897ChIPseq no logo sequence fimo position
Zm00001d050897PChIPseq no logo sequence fimo position

Interactions where ZmMADS39 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmMADS39 is the target  
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There are 51 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb183200_T002 from maize genome v5

Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFH
QENTDLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFH
QENTDLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFH
QENTDLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFH
QENTDLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFH
QENTDLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFH
QENTDLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFH
QENTDLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00319
PF01486
PF01486
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Nucleotide Sequence
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ATCCACCCTGCGCCAAGAAAAGCCA...

GRMZM2G055782_T01 from maize genome v3


Related TFome: pUT6437

Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKVCSR

Nucleotide Sequence
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ACAAGAAGCATCGTCCATATTTCCC...

GRMZM2G133568_T01 from maize genome v3

Amino Acid Sequence
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MGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFHQENTDLYNKINLIHQENAELHKKIYETEGP
SGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

Nucleotide Sequence
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ATTACAGGCAGTTGATGGGAGAGGA...

Zm00001d050897_T001 from maize genome v4

Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFH
QENTDLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

Nucleotide Sequence
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TCCTGTCCTGTCCTGGATCGAGTCG...

Zm00001d050897_T002 from maize genome v4

Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFKGVLKKGLDILRSVRPIVYGGLTDVVLLTSSSILAKGGSKLETTTAQLARKLSVWFETPAQVLSKLFIRNLT
TQRQKYNAQACNIQMLLQLLHIHRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKDHLLIDEIHELNRKASLFHQENT
DLYNKINLIHQENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

Nucleotide Sequence
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TCCTGTCCTGTCCTGGATCGAGTCG...

Zm00001eb183200_T001 from maize genome v5

Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLIIFSSTGRLYEYSSTSMKSVIDRYGKAKEEQQVVT
NPNSELKFWQREAASLRQQLHNLQENYRQLMGEDLSGLNVKELQSLENQLETSLRGVRTKKASLFHQENTDLYNKINLIH
QENAELHKKIYETEGPSGVNREPPTPFNFAVVETRDVPVQLGLSTLPQQNNIEPSTAPKLGLQLSP

Nucleotide Sequence
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AGCTTCTCTTCCCTTTCCTTGCTAA...


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